Garsmeur, O. et al. Woodhouse, M. R. et al. & Hochberg, Y. In the meantime, to ensure continued support, we are displaying the site without styles Davik, J. et al. Bringhurst, R. S. & Khan, D. A. Octoploid strawberry species are geographically restricted to the New World and are largely distributed across North America, with the exception of isolated After most ancient allopolyploid events, one of the subgenomes, commonly referred to as the ‘dominant’ subgenome, emerges with significantly greater gene content and more highly expressed homoeologs (that is, postpolyploidy duplicate genes) than those of the other ‘submissive’ subgenome(s)The emergence of a dominant subgenome may resolve various genetic and epigenetic conflicts that arise from the genomic merger of divergent diploid progenitor speciesHaving identified the extant diploid relatives of octoploid strawberry, we used this information to investigate the evolutionary dynamics among the four subgenomes.
The Pfam protein families database: towards a more sustainable future. Dobin, A.
Rizzon, C., Ponger, L. & Gaut, B. S. Striking similarities in the genomic distribution of tandemly arrayed genes in Hanada, K., Zou, C., Lehti-Shiu, M. D., Shinozaki, K. & Shiu, S.-H. Meyers, B. C., Kozik, A., Griego, A., Kuang, H. & Michelmore, R. W. Genome-wide analysis of NBS-LRR-encoding genes in Dangl, J. L., Horvath, D. M. & Staskawicz, B. J. Pivoting the plant immune system from dissection to deployment.
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& Wessler, S. R. MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences. Suyama, M., Torrents, D. & Bork, P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. McClintock, B. This discovery, together with the geographic distributions, natural history, and genomic footprints of the diploid species, provided a model for the chronological formation of intermediate polyploids that culminated in the formation of the octoploid (Fig. You can also search for this author in
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. & Davis, T. M. A new perspective on polyploid Fedorova, N. J. Crossability and phylogenetic relations in the main European species of Johnson, A. L., Govindarajulu, R. & Ashman, T.-L. Bioclimatic evaluation of geographical range in Sankoff, D., Zheng, C. & Wang, B. Understanding mechanisms of novel gene expression in polyploids. MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. You are using a browser version with limited support for CSS.
FaRXf1: a locus conferring resistance to angular leaf spot caused by Mangandi, J. et al.
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& Harrison, R. E. Phylogenetic relationships among species of Yang, Y. and JavaScript.Cultivated strawberry emerged from the hybridization of two wild octoploid species, both descendants from the merger of four diploid progenitor species into a single nucleus more than 1 million years ago.
Karyotype stability and unbiased fractionation in the paleo-allotetraploid Osborn, T. C. et al.
A., Govindarajulu, R., Ashman, T.-L. & Liston, A. & Dewey, C. N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.
Custom software for running PhyDS phylogenetic analyses is available on GitHub (see URLs). Zhao, M., Zhang, B., Lisch, D. & Ma, J. To obtain Bekaert, M., Edger, P. P., Pires, J. C. & Conant, G. C. Two-phase resolution of polyploidy in the Laricchia, K. M., Zdraljevic, S., Cook, D. E. & Andersen, E. C. Natural variation in the distribution and abundance of transposable elements across the Yang, J. et al. assembled the nuclear and organellar genomes. Stamatakis, A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
Collard, B. C. Y. A ddRAD based linkage map of the cultivated strawberry, Simão, F. A., Waterhouse, R. M., Ioannidis, P., Kriventseva, E. V. & Zdobnov, E. M. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
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